I am a Postdoctoral Scholar, working with Dr Nina Miolane at Geometric Intelligence Lab, University of California, Santa Barbara, USA. Previously, I worked with Prof Matthew J. Clarkson at WEISS (Wellcome / EPSRC Centre for Interventional and Surgical Sciences), University College London (UCL), UK. Before that, I worked with Prof Adrien Bartoli at EnCoV, Université Clermont Auvergne, France. I obtained a PhD in Computer Science supervised by Prof Niloy J. Mitra at Smart Geometry Processing Group, UCL.
I utilise geometric/deep learning to discover the dynamics of protein shape changes (conformational changes) from cryo-EM images. In this context, I also develop models that are biophysically grounded and more interpretable while not sacrificing their accuracy.
Bongjin Koo, Julien Martel, Ariana Peck, Axel Levy, Frédéric Poitevin, Nina Miolane
ICML Workshop on Computational Biology 2023 (accepted)
[paper]
Youssef Nashed, Ariana Peck, Julien Martel, Axel Levy, Bongjin Koo, Gordon Wetzstein, Nina Miolane, Daniel Ratner, Frédéric Poitevin
NeurIPS Machine Learning in Structural Biology Workshop 2022
[paper]
Simone Foti, Bongjin Koo, Danail Stoyanov, Matthew J. Clarkson
CVPR 2022
[paper] [code] [video] [supplementary]
Bongjin Koo, Maria R. Robu, Moustafa Allam, Micha Pfeiffer, Stephen Thompson, Kurinchi Gurusamy, Brian Davidson, Stefanie Speidel, David Hawkes, Danail Stoyanov, Matthew J. Clarkson
IJCARS 2022
[paper]
Bongjin Koo, Erol Özgür, Bertrand Le Roy, Emmanuel Buc, Adrien Bartoli
MICCAI 2017
[paper]
Bongjin Koo *, Jean Hergel*, Sylvain Lefebvre, Niloy J. Mitra
TVCG 2016
[paper] [project page]
Bongjin Koo
PhD Thesis 2016
[paper]
Tianjia Shao *, Aron Monszpart *, Youyi Zheng, Bongjin Koo, Weiwei Xu, Kun Zhou, Niloy J. Mitra
SIGGRAPH Asia 2014
[paper] [project page]
Bongjin Koo, Wilmot Li, JiaXian Yao, Maneesh Agrawala, Niloy J. Mitra
SIGGRAPH Asia 2014
[paper] [project page]
(*Joint first authors)
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