I am a Postdoctoral Scholar, working with Dr Nina Miolane at BioShape Lab, University of California, Santa Barbara, USA. Previously, I worked with Prof Matthew J. Clarkson at WEISS (Wellcome / EPSRC Centre for Interventional and Surgical Sciences), University College London (UCL), UK. Before that, I worked with Prof Adrien Bartoli at EnCoV, Université Clermont Auvergne, France. I obtained a PhD in Computer Science supervised by Prof Niloy J. Mitra at Smart Geometry Processing Group, UCL.
I utilise geometric/deep learning to discover the dynamics of protein shape changes (conformational changes) from cryo-EM images. In this context, I also develop models that are biophysically grounded and more interpretable while not sacrificing their accuracy.
Bongjin Koo, Julien Martel, Ariana Peck, Axel Levy, Frédéric Poitevin, Nina Miolane
ICML Workshop on Computational Biology 2023 (accepted)
Youssef Nashed, Ariana Peck, Julien Martel, Axel Levy, Bongjin Koo, Gordon Wetzstein, Nina Miolane, Daniel Ratner, Frédéric Poitevin
NeurIPS Machine Learning in Structural Biology Workshop 2022
Bongjin Koo, Maria R. Robu, Moustafa Allam, Micha Pfeiffer, Stephen Thompson, Kurinchi Gurusamy, Brian Davidson, Stefanie Speidel, David Hawkes, Danail Stoyanov, Matthew J. Clarkson
Bongjin Koo, Erol Özgür, Bertrand Le Roy, Emmanuel Buc, Adrien Bartoli
PhD Thesis 2016
(*Joint first authors)
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